Scaffold Ga0105746_1000203

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105746_1000203

Scaffold Ga0105746_1000203

Overview

Basic Information
Taxon OID	3300007973 Open in IMG/M
Scaffold ID	Ga0105746_1000203 Open in IMG/M
Source Dataset Name	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16488
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (78.95%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location Name	Oregon, USA
Coordinates	Lat. (^o)	46.2357	Long. (^o)	-123.9153	Alt. (m)		Depth (m)	1.2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020509	Metagenome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105746_10002033	F020509	GAG	MTNPVTPFRNNLFASRGCDIQAALDYVDQLATASTDPVAVQTAARVLLNTIESAVTQSQGPSPVEEALFAIIDKRIAVLQINTQVEINASIDDWMDNNLRDKVMDVLANEDIDDDISNWMSNNFDITDYNVDDAIESWAENNLDEKISEAVNNLTFSVTVN*

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