Scaffold Ga0105746

Basic Information
Taxon OID	3300007973 Open in IMG/M
Scaffold ID	Ga0105746_1000100 Open in IMG/M
Source Dataset Name	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007973 Open in IMG/M

Scaffold ID

Ga0105746_1000100 Open in IMG/M

Source Dataset Name

Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22354
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

22354

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (33.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location Name	Oregon, USA
Coordinates	Lat. (^o)	46.2357	Long. (^o)	-123.9153	Alt. (m)	Depth (m)	1.2
Location on Map

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Source Dataset Sampling Location

Location Name

Oregon, USA

Coordinates

Lat. (^o)

46.2357

Long. (^o)

-123.9153

Alt. (m)

Depth (m)

1.2

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014726	Metagenome / Metatranscriptome	260	Y
F014837	Metagenome / Metatranscriptome	259	Y
F063343	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105746_100010019	F063343	N/A	MNYLILLGILGLFILGNKVRTNWVSGIKSTLIKLMVPGADRRLFSGFVQATFSWVRNPASWVRVFNWTGVAAGINGLGGVGGGTLISRRHVLFANHVPYPARPIDIFFVNKDSRTFNYKVTNVQQVGSTDIAIGTLDKDADPSLIVYRVLPDNWLQYIANKPVPLTATYIAAGITTPIQTFVLPILYANQDRKVSTGDVININLAGNASVSIPAFEPARAFGDGVRGGDSGNPIFAMLGDELVLLGGWYTGADGDATVGTFPWLLYQKSAIEKIMGMKLQVADMSGLTRIA*
Ga0105746_100010026	F014837	GAGG	MIQRNINPKPRFVTLTSNPSTGALVGVPLATLFNAAFFRFPQDSIIHYVMVNSTLTCNGALSQAIGSIAYGQGNQTIGEVFGTGLNNFADNVLWRDELLNPAAGVISDSKSNQIVMNEFFVHTDSSIGIYVNGINASVMINATIAFNPIAEWVNFREPTSGARI*
Ga0105746_100010029	F014726	N/A	MGFQSESIISAASQKFGVIDYTRWQAIRWQWYSYVTYPTAGASELNFFGQVAGQTGVTLQDTNLPKAGSFGQTHFQLKSISTDIQLGNNNVDGFTLANGIANTIDTFALASDFLNGFVQAGVLEFSVGARPFATIPKPFMYAPPPGSTNDYDNSYANQITAVPTAGTSQVVGLPWVTQTKMRSNVYFVDPNILIEAEQQFNVKISYPSGAIPVIANALVNDSTNPLKIGVIFDGLLLRPVQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105746_1000100

Overview

Ecosystem & Geography

Associated Families

Sequences