Scaffold Ga0105745_1005689

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105745_1005689

Scaffold Ga0105745_1005689

Overview

Basic Information
Taxon OID	3300007972 Open in IMG/M
Scaffold ID	Ga0105745_1005689 Open in IMG/M
Source Dataset Name	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2776
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (91.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location Name	Oregon, USA
Coordinates	Lat. (^o)	46.2357	Long. (^o)	-123.9153	Alt. (m)		Depth (m)	1.2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008750	Metagenome / Metatranscriptome	328	Y
F011292	Metagenome / Metatranscriptome	292	Y
F042903	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105745_100568912	F011292	AGGAG	MTPKSYDIDTAKEMVGDARMRTIETKARQDADNGVKDGMAHVKAEVGYWDRVLQSMELVVYDATYRKRLERIQRIKEKEST*
Ga0105745_10056892	F008750	AGGAG	MRKVTLTEMLKEPFKKPSPLEVIARELAHAHLEKLEAETAVEYTQSIVDYNVTRIARLNARMEEYK*
Ga0105745_10056897	F042903	AGGAG	MAQLPYTYTICPPQEEPKRFTASCKEMGELLRHSLNGDLTINQRRTATWDMWSGNHMGVIEEKLHEICTKNKEKKDDCI*

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