NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104322_144363

Scaffold Ga0104322_144363


Overview

Basic Information
Taxon OID3300007819 Open in IMG/M
Scaffold IDGa0104322_144363 Open in IMG/M
Source Dataset NamePermafrost core soil microbial communities from Svalbard, Norway - sample 2-1-2 Soapdenovo
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterPrinceton University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3525
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Permafrost Soil → Permafrost Core Soil Microbial Communities From Svalbard, Norway

Source Dataset Sampling Location
Location NameSvalbard, Norway
CoordinatesLat. (o)78.11096Long. (o)15.55294Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000703Metagenome / Metatranscriptome928Y
F000781Metagenome / Metatranscriptome895Y
F064567Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0104322_1443632F064567GGCGGVSAAPLQLVVLARKAATAQSLDAALVCAVVEQESGWNPLAMRYEPAFFAKYVAALYTNYKVTASEAYGGGFRGA*
Ga0104322_1443635F000703N/AVLRIREYGEHDLESLRAIHARQGFAYALPDLSNPLFVTKLVLSETDQDSKNEKILGAALLRLTAEAYLLLDPKAGSPRDRWQALLALHAAAHRDAWHRGLEDVHAWLPPGLENKFGKRIERLGWIRDDGWTPYCLRLTDLAEK*
Ga0104322_1443636F000781GAGMLTVAQLAPLKDRDPYLYETLTKVVAAVNTTSQRAGVDPSTPSPAPSPIASLAVQAANGWFDISISDPSDSRPGLFYFAESDVTPAFSSPRVYFMGASRNFYGQLGNQTLYWRAYSQYVGSLPSSPVTFGSPATAVVGGGTSGPAPLPSSGSGALPNGLLRGGNGFGLHPGARVTRTTPL
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