| Basic Information | |
|---|---|
| Taxon OID | 3300007819 Open in IMG/M |
| Scaffold ID | Ga0104322_144132 Open in IMG/M |
| Source Dataset Name | Permafrost core soil microbial communities from Svalbard, Norway - sample 2-1-2 Soapdenovo |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Princeton University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3398 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Permafrost Soil → Permafrost Core Soil Microbial Communities From Svalbard, Norway |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Svalbard, Norway | |||||||
| Coordinates | Lat. (o) | 78.11096 | Long. (o) | 15.55294 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003244 | Metagenome / Metatranscriptome | 498 | Y |
| F005657 | Metagenome / Metatranscriptome | 394 | Y |
| F015243 | Metagenome / Metatranscriptome | 256 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0104322_1441322 | F003244 | GGAGG | LKWKSRRDPRGRVGDERVRTKFAWFPVDADDGYTYWLTPVVVREKLLPKVTRGGFEDDEQDWEVVEAKPVDGGKRKSRKKK* |
| Ga0104322_1441324 | F005657 | AGG | MADFTKEWIEHLKGQIAGRMSVVAEKMDAKAYDELVTDLAWFTFRFARDPDTKMRKVFR* |
| Ga0104322_1441327 | F015243 | AGG | MTKKNLREKLFGPREDRDAESAALKKEKTLAKINETDPGKPRARRTVGLTEQRLRAANQASWVASTKGWSDFFGRFTRSSKR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |