NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105668_1008653

Scaffold Ga0105668_1008653


Overview

Basic Information
Taxon OID3300007758 Open in IMG/M
Scaffold IDGa0105668_1008653 Open in IMG/M
Source Dataset NameDiffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_DNA CLC_assembly
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2480
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location NameAxial Seamount, northeast Pacific Ocean
CoordinatesLat. (o)45.9372Long. (o)-130.082Alt. (m)Depth (m)1500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015869Metagenome / Metatranscriptome251Y
F060428Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0105668_10086532F015869N/AMLTAKDIEFLARKTKLNPNRAESLFEEKEDGDLALQQLSRKRITRKEVFELSFPIFIKLLINREMKDVNQKHKNYISDFTGVFYPRIMEASRIKTKIPRKLNEENAQYFFVLASFFEEDMVAQMDVKQIHEMLKYTMDSFVKFKGQEYVESISKSFEYFNIIKKKWMRG*
Ga0105668_10086537F060428N/AMSDNLDKLDFDISYSIIFGKEEVDLIDIYEPKVSSFEVDMPEDKFVTFSSNLIKCFKSKIKDSPNKIRTDALIEVYRNAEDNYEKSEDCNLSLWCMASVNAFMGIARASTFNTVPSSQQIEDAKKDLEEFELTLDFDRISDLYLETRREALAERDSSWVEI*
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