Basic Information | |
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Taxon OID | 3300007758 Open in IMG/M |
Scaffold ID | Ga0105668_1008653 Open in IMG/M |
Source Dataset Name | Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_DNA CLC_assembly |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | Marine Biological Laboratory |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2480 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Axial Seamount, northeast Pacific Ocean | |||||||
Coordinates | Lat. (o) | 45.9372 | Long. (o) | -130.082 | Alt. (m) | Depth (m) | 1500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F015869 | Metagenome / Metatranscriptome | 251 | Y |
F060428 | Metagenome / Metatranscriptome | 133 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0105668_10086532 | F015869 | N/A | MLTAKDIEFLARKTKLNPNRAESLFEEKEDGDLALQQLSRKRITRKEVFELSFPIFIKLLINREMKDVNQKHKNYISDFTGVFYPRIMEASRIKTKIPRKLNEENAQYFFVLASFFEEDMVAQMDVKQIHEMLKYTMDSFVKFKGQEYVESISKSFEYFNIIKKKWMRG* |
Ga0105668_10086537 | F060428 | N/A | MSDNLDKLDFDISYSIIFGKEEVDLIDIYEPKVSSFEVDMPEDKFVTFSSNLIKCFKSKIKDSPNKIRTDALIEVYRNAEDNYEKSEDCNLSLWCMASVNAFMGIARASTFNTVPSSQQIEDAKKDLEEFELTLDFDRISDLYLETRREALAERDSSWVEI* |
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