NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105664_1043969

Scaffold Ga0105664_1043969


Overview

Basic Information
Taxon OID3300007756 Open in IMG/M
Scaffold IDGa0105664_1043969 Open in IMG/M
Source Dataset NameDiffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDBack_2015_DNA CLC_assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2115
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location NameNortheast Pacific Ocean
CoordinatesLat. (o)45.9372Long. (o)-130.082Alt. (m)Depth (m)1500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008625Metagenome / Metatranscriptome330Y
F013899Metagenome / Metatranscriptome267Y
F032036Metagenome / Metatranscriptome181N

Sequences

Protein IDFamilyRBSSequence
Ga0105664_10439691F008625N/AVEEIAGNRLVWRHIQKENQKMILDPLGYDPIIDVDEIHSRNRRKTDDPYIKATMKNADHKRWKDNTAERR*
Ga0105664_10439692F032036GGAGMKWIILVYLTIAAGTTEGDISYTRLEHPAKDFQECVDIEQQINDIVHSGRESETKYVRFLYWEYKNMLHEIKAECIYADSPVPNPKWFSEKQK*
Ga0105664_10439693F013899N/ALSASINSLFPDTCEIEEGETGQFELFQNGESFMKAGHGKFFDLEDVKKKLTESGQDLFTNR*
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