NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1951

Scaffold Ga0104986_1951


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1951 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)59849
Total Scaffold Genes94 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)73 (77.66%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012327Metagenome / Metatranscriptome281Y
F025685Metagenome200Y
F036230Metagenome / Metatranscriptome170Y
F057986Metagenome135Y
F062555Metagenome130Y
F064498Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0104986_195132F025685AGGAGMRYILDIFALIGLVSTIIVAGFYAGYVTYHPKCHTLPAVFTKECK*
Ga0104986_195134F057986N/AMINTIKRLITTPTALEMAAKELVEAQRAKLKAESAMEYALSVVDYNDARIKRLRMRMNELQGEQA*
Ga0104986_195142F036230AGGAGMIEVGDIVQVEPSQKLFGGCMVVVTELKDWGIQGYVQSAGVEGQQYIRLKTEQYEQTGGKAVWVIK*
Ga0104986_195146F062555AGGAGMDKTYEAIIDYAKPCMDAEKALKDAHNAVLEQNLDLAMIRTMDAVISARLMYGSLRDMKERQGGR*
Ga0104986_195152F064498AGGAMRQRWLYKVYFAGRFVRAFTSRTAARHFMEEMTDLDLPFLILPHESGQIPYMIGEKK*
Ga0104986_195170F012327GGAMIDKYLQHLSSRIDDKVSQLQIALADGNAKDYAEYTKMCGEVKGLLTARLFITDLHERLKTDDDNE*
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