Scaffold Ga0104986_1870

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0104986_1870

Scaffold Ga0104986_1870

Overview

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1870 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	37932
Total Scaffold Genes	58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (70.69%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005737	Metagenome	391	Y
F030055	Metagenome	186	Y
F071017	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_187029	F071017	GAG	MKDLLQTQFLPDSKTVKNLANLSSEQRLLMLETLRQTEARDWIRRYKKKIREEGKAEALAWWQKTLSDVVKRRGQKAADDLRKRMNEGGKN*
Ga0104986_187033	F030055	AGGAG	MKHIATLPAIDARIIIDQGLEHLVIEHDDLTAPLDCYFCPITGNLWHAYIGTTELYNVLSSAVINSLERGFAHFCV*
Ga0104986_187034	F005737	AGGA	MFDIEKYTKPTDWAQIALWIVSTAAIVVVLLDLFVWRP*

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