NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1862

Scaffold Ga0104986_1862


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1862 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)37456
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (88.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002722Metagenome534Y
F051711Metagenome143Y
F066596Metagenome126Y
F094997Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0104986_186213F066596AGGMVTPQAIENRLASLSKEVDDAHTFLEQAEHAYHKAKTEYEIEIAHNRMKLSTEKMRVQDVQDFALIATQEQYRQLNMAEATVKAARANATRIRTQVDIARSIGTSVRASLEI*
Ga0104986_186239F002722AGGMAGRTGVRATLASFLTTPQITTLNQVFTSFPKRINFQVNSTAGQLSRAAVVVFIQSENETRLAIGGATNGWKRVDYSIVLQVFHHSLHKNAEDAMTDFDTLIDNIKTRLRSDHNFGDTTGTLVWQGAEPIINATYGEPATVAEGATETYAELQFDVTEMIQA*
Ga0104986_186244F094997N/AMVRQALEKAGANMDKGAMAARDEMMLTLIQLSKEQIEGRRPKGEKATSGQPPMNRTGNLRRSIRGEKFRKGFASYSAIVGPTIIYGRAVELGGQWAPDSWRGTSAMAGFPYMKPAFVKFRTVAPAIIAKHIGKVVK*
Ga0104986_186253F051711AGGMAYINQPPDLRSMFADLDSRLRKLETATRFTFPNVTSDPSNPRKGDAWLNTTTNQAKIVDANGTVRILTWT*
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