NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1784

Scaffold Ga0104986_1784


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1784 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)32046
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (82.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000843Metagenome / Metatranscriptome864Y
F002405Metagenome562Y
F081271Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0104986_17842F000843N/AMPLYQVHPRELPEVWPVAAPLIQRAIDLDPDLNKIDLIEYAVRTGKTYLVVWDEPGEGITGAAIVDIVDTPCERIAHGNLMGGKAIVRPHVIEELYKWMRLHGATTAQLWAKGTLVNMYEKIGLKVTHQVMRIKL*
Ga0104986_178425F081271GGAMSRYILAGFESEELEQKIKDHQAFALVRELNFKYNLKVLGTTEYQHGTAFQMCHTNGMAVGKVFVQTIGDGKLEYCYRTPYYKKERGSSEEDKETLRSVKVSSLMSSIKRVKAIIDIPKLLGKKMGKISDAKDIMEKAMGSAYKSTGELSPNEIQALICAYLGESPSGNHITIDTLKCKIVLDKYNEADRVQVKKLEEVGRFFHNPFYMIGADSFGHFIVGKVKVTGEKQYEIVEPFKRYKDITERDDLIPVMTMTKLAYEGKGHRLQNGYIPAQDMYDENLDAVFFYHSQATHYDYIWMATPC*
Ga0104986_17845F002405GAGMVPEPDWAFPFEVMEVGDSFFVPTLRFAEMIYSIDSGAKRAGIRVKSYIVVKEDHIGVRTWRIR*
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