NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0104986_1771

Scaffold Ga0104986_1771


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1771 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)31290
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (55.32%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000370Metagenome / Metatranscriptome1221Y
F006784Metagenome / Metatranscriptome364Y
F070034Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0104986_177116F070034AGGAGMANTTFQGPVVSLNGIIGGPNPNAGSGANDTEQGGNVVYSFSNVTTLIISSGQYSGTTLLATASRGALVFTSNCCSSVAGYVFSDGTTWKQVNAPASNISDV*
Ga0104986_177117F000370AGGAGMGMYKSDVKPVICDANTSTAVLFTGPTRLRGFMIQAGGTSGACIINGLSDTSTVSTSTNTQVYIPVQVGANQTETLNLPEDGVLYAQRNGTGIVDGIGIASNTSGLTVTLFIDK*
Ga0104986_177139F006784AGGMGEVIKIECKTKEIIKSKKTGKTYENMEEFLKENTMEDLQKDLNVMVTNKGLDLMNKIFNNK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.