Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1628 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1628 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	20223
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (95.24%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

20223

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (95.24%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F012214	Metagenome	282	Y
F071969	Metagenome / Metatranscriptome	121	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_16281	F001059	AGG	MATYDIEALKADLPTAKDLAQFVYDRTQIALDLIGKPKEDQYIVAKNALEGKKVPAEYITSDNPYVDKKEQIPVDEKRKLPPRSEDLPPIENRVNFFGAFNMPHPQDPQGDKKVQINFWKYDNGLITYQIMGPLEQIAVGTKINKYGQEVPERYSWMDPRTEELVVRRPDGTYTKEGRGLYLYCSGEKGSGIWRMIDKAISATSSKNITDPWA*
Ga0104986_162814	F012214	GAGG	MSDYTRLRTPFLNMSFTPDVPSNALGPNEYNSGLNVEADVRGIKKINGEQSILDQIPGHTIFIEGNFRTQATWIYIAATREGKWYQITALGITNITPGFGANPNAALSGYNDDLNITTSWVGGVFFINDTLRPPMYYRPTDTEIQIYDSAPDNFVWNYGTSVVATRAAFVRNFCSPNVGNILIAGNLTEDLDTSVTVNYPTTVRWSQAFANTGVPATWEPTLTNIANEQEVPVRGPLIDGFFLGGNFYVCSYWDTVVFSPIAYQSSTAPIFGVRLFNQGRGLLNNNCWANTDQYVYGIDSRDIWVFDGSNFSSLGNQKVRNYFFANLSPTYQDRLFVVNNTQKYQIEIYYPDLNSTGWCNKMLSWRYDLNVWNAPKDVQGACNACEAPVYNSDEGDFMYASRCVTYGVGGVSSAQMVQTGQGNSFDGAPIPALFERNNVVLQTDKGPVPYSSKVYIHRALPEIAGTGTVDITLGGANSTAQDPTYGQTGHVAIVTDNPWVTTQQNSVRTVSIKVESNDATDAWNLTAMNWQASVVEDAF*
Ga0104986_162818	F071969	AGGAG	MKQALISTIEFRETGYRVAEVVAEGQTFPVSTEMFWTPCADDVVADQFWYEPSDQTIKPIPIPPEA*
Ga0104986_16284	F004695	AGGA	MLDKQNVIVEGIESPSGNKDLINKVAHEIYVKMVDYLRLTQSKNTYNRFSDYHYLNIPISNSTEPIRGIDYIHPVVAPGIDYATAIITKCLMPNGKVNFEFERFTEMDSDQSNQATEMTKYMINSKNDSYQVIRDWAQDACLHKNGIVMVSPNRRPITQYKQVEGTKDQLRSFEIMAGEKGLTTKRQNMRKIDVDLQGAMQETMAQGPEATDIADTLNANVIYRAEYKLTGYETEVKIKHVAQHYFVCNPTISTIQDQDFCGFYDPMTIHEAKEQFPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVVMLTTAWLRRDIDGDGQEELIECCFSGSYVIYAKEVEFIPLANMCPKPIVGNFFGYSLAERLVPMQEYATAIARAEMAFAMQSSTPRIGVNPEFVDAEEIQRGVSAMFILDRKFDPAKHVYEFEAMQGNLAYVQSAMQRFDADKMAMIGMTSPNDVLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLRDMIYLVWKTLIQYEDDYNIQQLAGVVSGGKPFMDALSMKNFEFIDRKLINIDLALGFLSEENRLTRQQLIVQCQTAFAQAMMQLDPSVPELFAKVRRPYEDTLRVLNVKDVDAYLPTIEEAGKIAQARSQQGPSMDDQEKQTKMDLNKASTQEKVAQAELLYKKIEDIDIDNEFVKKAAASGKLSAVEID*
Ga0104986_16285	F003521	AGGA	MKSMVLKIREAFNRRTRVQHTYKEASPEQRTLVLQNGECASRLLLNEDFALMFNLYRFNLLERLEDVSTDADRISNAHFVAGVRDFLGFVEKQELLGKVARKKAETLEK*
Ga0104986_16288	F000857	AGGAG	MELDNDSTPQISEDYFTKGNLEAGIDGVFRQNDKLFKEVKSGTWSQTFKTKNLDYKVGAINGHRYVQYDQKNVEEVKQFCKERREFHKIYGTDNPLFAGTFHAMQLPKCFAHEIASKWFNNRPWDLIKQEKEDKILFYAIVNEYYSDFVCHPSGKIPLPYNPAIPTK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1628

Overview

Ecosystem & Geography

Associated Families

Sequences