Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1594 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1594 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	18700
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (51.72%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

18700

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (51.72%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F005584	Metagenome	395	Y
F006138	Metagenome / Metatranscriptome	380	Y
F009142	Metagenome	322	Y
F019290	Metagenome	230	Y
F035669	Metagenome	171	Y
F041645	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_159414	F009142	N/A	MTNSVQINVEDALDNLLANIPNLNVYKTNRVGAKLFPFATISASVGGQILGNYTGVYEVDVTINYSDTATKISQEDFDAEYCSIFEAFYSETPPLFTKIQNNIVDTKVYTARITGQTPTIRTDKRAWQRGLNMSLICTPSETDDGLRYLNFYQKQNSMYVAVI*
Ga0104986_159416	F005584	N/A	MITDLWQSVTGLGSSAVSASVTDLAVSSELDVGGDVFRITQNAVVCASMISAPVIGNLCTVSGIERMIAGFSQSTDGLSYTIDLAEITT*
Ga0104986_15942	F035669	GGA	MREGKLNELRGNSRLALGFFNSIIRRIECTKPLAGAGIAISEKENGYEISSIGGVVSSGGSISGYSEITLNVCRNGNPDTIIVLGIE*
Ga0104986_159421	F003049	GGA	MKNAKQIIGCRKSKKGENTKGLGIIKFGKSRIDKTRYVIVDITCDDKAGKELYEAGMIALRYDPEAVIEYAIKKALAEMVKCKK*
Ga0104986_15943	F041645	GGAG	MSEAIIGSPISGQKVLRRQNYQKDLVGLETIIEVYIIRTADRVTLAPARDTIHSSFSTATPKYSRMAVETISFDETDGGLTTMSVVYVGLTTSTGLPPPIIRLIPTAGEGVYGPPLVIEAEYVTDVSETEFMAGQLSQNNGLQQAPLFTTTIKMPEVINGTTMPKDPRPAFFQEGVGLLTQYGGYCFLSMSCERRGLFLVARNTFHEVQQLATISRGTLQ*
Ga0104986_15947	F019290	N/A	MEGHTYWGTTNLKVASAVAAFGAKPRPVDPVTRVIKDGHQQVTFWFISDGNGDIAKKEMERTWADMQSDQESPIRYVRAALENRETLLGLVKRAEPIRIIQIGGQTLMVPENASPERKKALLRHI*
Ga0104986_15948	F006138	AGGAG	MPATTIGQAGLVFGATAEGLGLVQSFSETRNVEKSEIRDRTGDIVGVAYYNATTGYSLSVAVTGTYGVTAGAALAALANATTLGTTRIDSITINKSNDAFVTLDISATGYPNVS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1594

Overview

Ecosystem & Geography

Associated Families

Sequences