Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1572 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1572 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	18020
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (31.82%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

18020

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (31.82%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F017470	Metagenome	240	Y
F027440	Metagenome / Metatranscriptome	194	N
F044452	Metagenome	154	N
F063631	Metagenome	129	N
F079983	Metagenome / Metatranscriptome	115	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_157210	F044452	GAGG	MTNRCLRCLQVIDADRKAMGFDRCIKCAPQWTYKGALNFGHKTGGAIQPMHPDVFKVHKRVTARSAKGTNGRSFQTGTTNITIKDA*
Ga0104986_157216	F017470	AGG	MSVEEISVALEIDVMVVKLSLEAVGGSVAVRSEARKEALKEDDITDDVSEAEAKEMMGIIKNIARDEDSGVYARLNAAKYAHGAKRGYHKRHLDMNVGSGELLLKINEAYMSASMRARAALGGQSLTAKEISVIEAPITVEASVAEQSPIDQTTPSQPAALNPRPFKI*
Ga0104986_157221	F079983	N/A	MPATWDLPRSSGLWNQQDIANYNRLPIWMAMQQTKKMQMWSRWKDMFPKIKWKQNMGDILQGVIAENSPIVTQVHRPKNITELPLKTVASTWERTNQSRVKRHNFESPQFNFLPSFRDFRTKQLKFAAEDLSKQIAVGYDFFTRDNVFQNSPFIYIVGNTTVGELPLINAPAALPTDTSAIKDTAYIAAQAAKIGSDDNGFLSYRQIQAVASYAKNYLMIPPMDGMQNGAPADNEMSKGKYVLCGGSEIYEGLAFDAHVLNTRPLAMNLLNSSFQGAIGPNIVFREEFYPLRFAEDGTMPAPEIELLLADSGYSTPNATRQTVINPDYARAAIGVAFLIGYNAYEQIDVGPPPSEFTGAAINGKRFNQLTWNGEVRLTDNVLVNYGSNNLDTNKYGEFLQLISDTVLGIIGNTSRNIIPILYRRQIAPSLFV*
Ga0104986_15727	F063631	N/A	MQNENTNEEPEKLNSYQLWGLLFPACSCHVDAERGHFIRRTPGNNLAHAIVASNETAEWVKAHCAGEHIHIQRIEEDGHNYSVVWDATEWALSDERRRLLRANHIASDVSYIRKKAEALRIELIGDSLSRAKLFTRQKATEVAIAITSQGEEVYLHKSKQLNEALKGAFSNINCYFPIEEVIKIVDTRGVIESLNNNQQENEQTITEQDNQRGDEVTEGHGESDQAQCLAPPTAGG*
Ga0104986_15729	F027440	N/A	MSTKNLELVASFAGSVFTSDKDGNPSFTTNERHVRKTAKSAERTVSFQAPILAVSDLQYYIKRGEALAEVVTEHVTKQKNEDGSVTETKRVSNALSDLVSEHLLDIAEDASEAYLSKGNTPDYFAAFIYGVSADRETEKSVLKKIESIRSEIGSIVFAMAGEWNDDVARSLGVSDKEAAVAKQANLIGSLAQLLAKANELSAAKAKRESKKKSV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1572

Overview

Ecosystem & Geography

Associated Families

Sequences