NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1459

Scaffold Ga0104986_1459


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1459 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)15256
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (76.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002214Metagenome582Y
F002269Metagenome / Metatranscriptome576Y
F004430Metagenome / Metatranscriptome438Y
F033040Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0104986_145913F004430AGGMANSGEVLKMLIPTGGWAITGEEYEGIQFLTCEPITKAQFDAGFAQYDAWKAEQDTKAATDKTVLLAKLGITADDLQILLN*
Ga0104986_145914F002214AGGAGGMGPVQFNVSNETKYDLRIQASNGAQAGAVSGASTNLSFTPDDTNITCAMRWYQDGICILQGSVAWSAGGSGADDGWSTSNLICMNGQANGVGFSGCNEGWVELQPYNLMANGGEVSVTYTNA*
Ga0104986_145916F002269AGGAGMKSQLKAAALSYVRAALASAAALYLSGISDPKTLANAFIAGLVGPVLKALQPSEKQFGLVKK*
Ga0104986_145917F033040AGAAGMEIQAWVAVAVGVMAILSGLYAAVRFIVRSIMAEIGPQANGKSLKEQVNRLEARLDHIYTILLRL*
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