Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1429 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1429 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	14939
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (78.57%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

14939

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (78.57%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009140	Metagenome / Metatranscriptome	322	Y
F011742	Metagenome	287	N
F012211	Metagenome / Metatranscriptome	282	N
F020138	Metagenome	225	Y
F032955	Metagenome	178	Y
F040534	Metagenome / Metatranscriptome	161	N
F046258	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_142914	F032955	AGGA	MTKNEAHHLLDQRKQGIAVAQHLINHALVISGDIGPSCFDGKNSRLEGASMAQGEGIGGLSNSLMAWDNHRFNQHHEGKE*
Ga0104986_142919	F040534	AGGAG	MNTDKSGEGRIVGLSTLGEAMSEEEFEDKMNTYELDQQYAEYIMEHRVVGNGEMLIRIMERGDLYEDFKEHIMFGNK*
Ga0104986_142920	F009140	AGGA	MRLNLTHRALLKRLSGGPRSMIDLTHAATDNNSVSFHYQRYLPELERFGYVINHDQKWHLTEYGRMEMNRAISGAAMRIENGSTTEPYDGKELRRNVFRRGCYDFLQLPSRFGNSFVPRKTPT*
Ga0104986_142921	F012211	AGGAG	MPTDEEQFKYECWAIVQELDPEDIADAIGDSVALVEAIKANHAEDVASIVMNRVELKVRRRAELRVFDVVKTQWIDDIEELQHYRNLRIERVQKALDERKIIEAKMDAPFRQMFDE*
Ga0104986_142922	F046258	GGAG	MKLLTIAIRRVLSYFEIVTLQPSLPILLKEKTPARMTLPTLSITDPKFVYQSAACTDISQTFEKAKNDRLQRLLNDADGNRKQDQSTGAEMLKQKLRRVHG*
Ga0104986_142926	F020138	AGG	MNQQQTTRLNAFWQDVEAHKALNPSSPENALVILKSVALDALLAAQDIEQIGVNDDTR*
Ga0104986_142928	F011742	AGGAG	MTTIEFVPFDWVDDDFNPEIDRIEVDYQWHEGDDSVGLISYCEKTVKWMRFNLEIKDITDELSYADLAYLKHEIKRNDQEIADERT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1429

Overview

Ecosystem & Geography

Associated Families

Sequences