NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1379

Scaffold Ga0104986_1379


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1379 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)14432
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002009Metagenome / Metatranscriptome604Y
F002149Metagenome / Metatranscriptome589Y
F003304Metagenome494N
F007467Metagenome / Metatranscriptome350Y
F021063Metagenome / Metatranscriptome220N

Sequences

Protein IDFamilyRBSSequence
Ga0104986_137910F007467GGCGGVNEKEAWAKFEAGLKDAESFDEAVAWVKKNKKIVEKLTMMAMIRRFNEDISHANKTWRN*
Ga0104986_137914F002009AGGAMTAPTIQEMGNAAQEIVWRVMGKGSDKSAYGDWLVKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETSIDHLERALVRSLFVLAQIKKEVPRL*
Ga0104986_137916F003304GGAMEGRKMKQALVTQSFGEEWKKIIDLTRPRMEAYCKRHSVDFILIDKPLTHPMQYSKSAIGNIMATKNYEQVTFVDADVLIANDCPNLGDDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKVVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRHKDAMIIHYAGQSNDLVKLANQIQADEAKLVELGR*
Ga0104986_137917F021063GGAGVRSTQLCRGDYDDRLQQLAGEVALQAIRDLRMLRKRGMVKGMKIIKDHQGVPLNDALEYKNSHEVQKLLRDFKTGVVSWWCRASGVQIDNRTLLRKLKENDYVLPT*
Ga0104986_13792F002149GAGGMTAVEYIEQSSVPEAMWPNLADWFGWFEKQGMVGIVRDEDGIAGVALARCVKDGQKPDHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRAGKPKDYDYMTFMRKALL*

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