Basic Information | |
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Taxon OID | 3300007734 Open in IMG/M |
Scaffold ID | Ga0104986_1047 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 10322 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (64.29%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002009 | Metagenome / Metatranscriptome | 604 | Y |
F003304 | Metagenome | 494 | N |
F007467 | Metagenome / Metatranscriptome | 350 | Y |
F021063 | Metagenome / Metatranscriptome | 220 | N |
F025460 | Metagenome | 201 | N |
F030376 | Metagenome / Metatranscriptome | 185 | N |
Protein ID | Family | RBS | Sequence |
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Ga0104986_104711 | F002009 | AGGA | MTAPTIQEMGNAAQEIVWRVMGKGSDKSAYGDWLVKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETSIDHLERALVRSLFVLAQIRKEVPRL* |
Ga0104986_104713 | F003304 | AGG | MKQALVTQSFGEEWKKIIDLTRPRMEAYCKRHSVDFILLDKPLTHPAQYSKSAIGNIMATKGYEQVTFVDADVLIANDCPKLSEDAGVFCAFDEGAFLDRKPDMVKLAAAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWFNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLAGQIQADEAKLVELGR* |
Ga0104986_104714 | F021063 | GGAG | VRSTHLCRGDYDERLQQLAGEVALQAIRDLRMLRKRGMVKGMKIIKDHQGVPLNDALEYKNSHEVQKLLRDFKTGVVSWWCRASGVAIDNRTLLRKLKENDYVLPT* |
Ga0104986_10472 | F025460 | AGGAG | MAVLDIPAMMDMFRQDELQKQAVAEAQRKQALEERAMAIKEQPDVDFTFEKGGLKVKGKLKDLPTLSQDPAFAPYLAGIGSTITNEQSLENEEVQAQRESINDRLRKLSAERLKQELEIAKGDTRTGAMELGLGLVGLKKRSDVMKELEAERGVLQGRIAELGFNRQTGQMQTETPEGAPTATEPSAPAIAAPATEQQPAQPQTPKNFNSLQEARAAGVKPGELIYINGKPGRLQARQ* |
Ga0104986_10475 | F030376 | GAG | MKAITMITLTAMLMASVMAEDEDADAADFVGAVLKRNGFSCGRGCVISEDGGMAYSSSSGRSIISTDGFYYKSGSSVVGKDETFISKSRNFFYGTSTTIKAGSAYMNGDAVWVGSQEEDND* |
Ga0104986_10477 | F007467 | N/A | VNEKEAWAKFEAGLKDTESFDEAVAWVKQNKKIVEKLTMMAMIRRFNDDISHANKTWRN* |
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