NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1047

Scaffold Ga0104986_1047


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1047 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)10322
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002009Metagenome / Metatranscriptome604Y
F003304Metagenome494N
F007467Metagenome / Metatranscriptome350Y
F021063Metagenome / Metatranscriptome220N
F025460Metagenome201N
F030376Metagenome / Metatranscriptome185N

Sequences

Protein IDFamilyRBSSequence
Ga0104986_104711F002009AGGAMTAPTIQEMGNAAQEIVWRVMGKGSDKSAYGDWLVKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETSIDHLERALVRSLFVLAQIRKEVPRL*
Ga0104986_104713F003304AGGMKQALVTQSFGEEWKKIIDLTRPRMEAYCKRHSVDFILLDKPLTHPAQYSKSAIGNIMATKGYEQVTFVDADVLIANDCPKLSEDAGVFCAFDEGAFLDRKPDMVKLAAAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWFNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLAGQIQADEAKLVELGR*
Ga0104986_104714F021063GGAGVRSTHLCRGDYDERLQQLAGEVALQAIRDLRMLRKRGMVKGMKIIKDHQGVPLNDALEYKNSHEVQKLLRDFKTGVVSWWCRASGVAIDNRTLLRKLKENDYVLPT*
Ga0104986_10472F025460AGGAGMAVLDIPAMMDMFRQDELQKQAVAEAQRKQALEERAMAIKEQPDVDFTFEKGGLKVKGKLKDLPTLSQDPAFAPYLAGIGSTITNEQSLENEEVQAQRESINDRLRKLSAERLKQELEIAKGDTRTGAMELGLGLVGLKKRSDVMKELEAERGVLQGRIAELGFNRQTGQMQTETPEGAPTATEPSAPAIAAPATEQQPAQPQTPKNFNSLQEARAAGVKPGELIYINGKPGRLQARQ*
Ga0104986_10475F030376GAGMKAITMITLTAMLMASVMAEDEDADAADFVGAVLKRNGFSCGRGCVISEDGGMAYSSSSGRSIISTDGFYYKSGSSVVGKDETFISKSRNFFYGTSTTIKAGSAYMNGDAVWVGSQEEDND*
Ga0104986_10477F007467N/AVNEKEAWAKFEAGLKDTESFDEAVAWVKQNKKIVEKLTMMAMIRRFNDDISHANKTWRN*

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