| Basic Information | |
|---|---|
| Taxon OID | 3300007559 Open in IMG/M |
| Scaffold ID | Ga0102828_1133383 Open in IMG/M |
| Source Dataset Name | Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 617 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Columbia River Estuary, USA | |||||||
| Coordinates | Lat. (o) | 46.2 | Long. (o) | -123.94 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001538 | Metagenome / Metatranscriptome | 674 | Y |
| F026856 | Metagenome | 196 | Y |
| F092031 | Metagenome / Metatranscriptome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0102828_11333831 | F026856 | N/A | KHKTLCKSSDMTVIWNNLSEWAGAADSAELRHKIVIAYKDALSREKK* |
| Ga0102828_11333832 | F001538 | GGA | VIDTIKLFPTVQPSGYPDKHDLAQVKLEKQHEMNKENELAKQKQVQLQDLAFAIYTKKAAQERLRMEIFQNRKLDIYA* |
| Ga0102828_11333833 | F092031 | GGA | MVTRKPPAKVAPVKRRSPKTEQTINVSVAAPTKPEVKKDDSALGKVIGLIEWVDNP |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |