Scaffold Ga0102873

Basic Information
Taxon OID	3300007545 Open in IMG/M
Scaffold ID	Ga0102873_1001135 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007545 Open in IMG/M

Scaffold ID

Ga0102873_1001135 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8711
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (71.43%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

8711

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (71.43%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2314	Long. (^o)	-123.8828	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.2314

Long. (^o)

-123.8828

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F001125	Metagenome / Metatranscriptome	769	Y
F002245	Metagenome / Metatranscriptome	578	Y
F003422	Metagenome / Metatranscriptome	487	Y
F005741	Metagenome / Metatranscriptome	391	Y
F006984	Metagenome / Metatranscriptome	360	Y
F009143	Metagenome / Metatranscriptome	322	Y
F021481	Metagenome / Metatranscriptome	218	Y
F024319	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102873_10011351	F024319	AGG	MTNRIFESRNDYMTNSDYVACSSGCGRVTAWTLCVMCGGNYATHALVNVK*
Ga0102873_100113514	F002245	N/A	MKVPHTITFEAIIDLDKIPANMLPTLIALPENAIQEMCKGATLNALSLSNTLEVANTGNYWAELTVKDTE*
Ga0102873_100113518	F021481	N/A	MSLNYSTNQLTKGNKMSPILDTAKGRFYRKGDVFTTGKSGITGTITEIISIRPTLTKLGLNTENGLRWAMVKIGA*
Ga0102873_100113519	F005741	GAG	MKNRYRVEIYDANKMNDVTIYSDSGVDKEYLTELVFSNLRKFSGKVNAYVFDNVKKKKTTAMFLDEAVVNKYKVI*
Ga0102873_100113522	F003422	N/A	MTNELVSSKYTFVCDPDECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATIAPSNQTKEEQMESTVTTSPIPDTYNPNLLVTYKVIRGYSDAEYATDKVASLEWDLHNGRQSQKNVTTLQSKINTVKDIITEAYADSDDQDTLRAIAEALGIELVREVLFTATLEVSGTYTYNILDSDYELDLDSEVTDALYADSNNGNITIDDTEVCHVREA*
Ga0102873_100113526	F001125	GGCGG	MGDRANFGFKQSDGNTIFLYGHWAGHEMLANLASAVSAAEPRWQDESYATRIAISNLIGEDWKSETGWGLSVDRILDNEHKIPVINWTAKTFTLFEEDLTTEVFSLSLADFVQKYSRLVMV*
Ga0102873_100113528	F006984	AGGA	MPNWCYNTLTIQGPKSEVDMIKDRLNKPFTLAQETFGMGDISSSGFPTKIQQVSYSNPVFAFFNIHSY
Ga0102873_10011354	F009143	GAGG	MMTKWDTIQADVSDAYVYLDEEEMYEKALAEGAIDFDSDDYDDDELHKALTLDWND*
Ga0102873_10011359	F000447	AGGAG	MGYIEIFRMNEEGAGWVDLSEATPDELFQIEIGLLNEGAFE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0102873_1001135

Overview

Ecosystem & Geography

Associated Families

Sequences