NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099849_1022413

Scaffold Ga0099849_1022413


Overview

Basic Information
Taxon OID3300007539 Open in IMG/M
Scaffold IDGa0099849_1022413 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2743
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001942Metagenome / Metatranscriptome613Y
F007417Metagenome351Y
F008281Metagenome336Y
F008595Metagenome / Metatranscriptome331Y

Sequences

Protein IDFamilyRBSSequence
Ga0099849_10224131F008595N/AVIITFNNVEYRASDLNEEQMALAAKLNVAGKKLARLQEYYDDYVITNEYKNLVIESFDRAIKAEEVEVVEEE*
Ga0099849_10224136F001942N/AVPRKTSDQHQNNSRLGALGESLVQTFLLEYADFCFPTQEKHPADLCMELNRCMYTIQVKSRRATKQNKFVFAAENSRSQSETYKNYHCDILAFVFFYDDQKRIMFKANTSSQNYFTFDKKAITESMELDSLKETLDNLSSVPVLNPII*
Ga0099849_10224138F007417AGAAGGMTRYTLQVQLPSLGWVVAIKTSDLFYMASKRARLIKEGHKVKLTKENK*
Ga0099849_10224139F008281N/AMCNTKHGVIQWRWKDSGQPSPEYKSLNHQWWIPKKSEFELVTKVDADIKQEIKDEIWEDMQSDFEYQKSI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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