Scaffold Ga0105016

Basic Information
Taxon OID	3300007512 Open in IMG/M
Scaffold ID	Ga0105016_1004255 Open in IMG/M
Source Dataset Name	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate b
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Bigelow Laboratory Single Cell Genomics Center (SCGC)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate b

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Bigelow Laboratory Single Cell Genomics Center (SCGC)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20955
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (40.82%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

20955

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (40.82%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)	Depth (m)	247
Location on Map

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Source Dataset Sampling Location

Location Name

Cariaco Basin, Venezuela

Coordinates

Lat. (^o)

10.5

Long. (^o)

-64.66

Alt. (m)

Depth (m)

247

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006483	Metagenome / Metatranscriptome	372	Y
F013467	Metagenome	271	Y
F047724	Metagenome	149	N
F062176	Metagenome	131	Y
F066699	Metagenome / Metatranscriptome	126	Y
F090490	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105016_100425515	F066699	N/A	MKIKIPIYWDFKNQEESEVIVNVPNEAVKKVFMDFLLRKDYDNRREWLIKNVPEINLNTPKELF*
Ga0105016_10042552	F047724	N/A	VFSKDDWAIGLESNDKEYLTRRFWSFWNWKATSGKLDWWTDKFAVFWTDEERFEQAVLDICRTRVLQDIGGETFKGEKGGVDTMAYDLRKEFMANIKDEIFYTHKMRSIELDPHAELQISAENLTDWDAVKA*
Ga0105016_100425533	F013467	GGAGG	MTVGELKNWVWCEDCLEWKDAGEEVSFVNIAEDSFGKDVMTFECDKCEKTNVGIVISSVTRPRGSN*
Ga0105016_100425534	F062176	AGTAG	MQELKTKQKTKMTYEVKITSVDKNFTYVVKAENVLNAEAAALKELGKDIPKDYITAGQYHIDHIENLEATH*
Ga0105016_100425535	F090490	AGTAG	MSGEAFASPLFFKNFKMAHLITVTDLNDQELLFNLDTVVSMERGNNNNTIVTTRWSRTDIKETLDEVKNLAQKSSLHYARIKNQAKD*
Ga0105016_10042554	F006483	N/A	VIRKGLTWTVERAILIEVMGRYIHTDCTYVQDHENGTYTFTGPCKKTGKPYSVTIPGHELWDLNQGELIQDALKSLNADDREFVASGYSPEGWALLWA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105016_1004255

Overview

Ecosystem & Geography

Associated Families

Sequences