Scaffold Ga0104999_1005463

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0104999_1005463

Scaffold Ga0104999_1005463

Overview

Basic Information
Taxon OID	3300007504 Open in IMG/M
Scaffold ID	Ga0104999_1005463 Open in IMG/M
Source Dataset Name	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11708
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (86.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Water Column → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)		Depth (m)	267
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010921	Metagenome / Metatranscriptome	297	Y
F016881	Metagenome / Metatranscriptome	244	Y
F037764	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104999_100546311	F016881	AGGAG	MAVLQDKAWWKSKTIWTSVIAGVVGVLQAAGYVDQVPEVVWTLLASFGLYSVRDAVGKSGPQ*
Ga0104999_10054633	F037764	GGAG	VGLKYIGNNRFDTKVTIKSGGGEVTGSFSVDGAIKEKGLSIPTLIEKMVVDRLGSDGETPDFLNFVPINTDDGEVIITD*
Ga0104999_10054636	F010921	GAGG	MALNAKGGVKIVEGKAYIHPLTLPEIEFLLNLLANAEHKGSDLQKVMQVTYKLREEYKLTVEHNT*

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