Scaffold Ga0070747

Basic Information
Taxon OID	3300007276 Open in IMG/M
Scaffold ID	Ga0070747_1011957 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0070747_1011957 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3681
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3681

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.124826	Long. (^o)	-75.260873	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.124826

Long. (^o)

-75.260873

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F009320	Metagenome / Metatranscriptome	319	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0070747_10119572	F003521	AGGA	MNSIEEKSLVSNIRNYFNRRTRIADANKESDVTRKALVIENGESASRLMKNEDFALLFNLYRFDLLSRLEECRTDPERIENAFNVAGVRDFIGFIEKAEYLGKVAQKSNTSPKE*
Ga0070747_10119573	F004695	AGGA	MLDKQNVIVDYIEAPQGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGRVNFEFERFSEADTEQSNQATEMVKYMLNSKNDSYQIIRDWAQDSLLHKNGIVMVSPVREPVTQYKEVEGTKDQLRVFETLAGEKGLTAKRQEMRKIDVDLQGVMQESPDMNDAETIQASLSANTIYRAKYKLTGYSTTVKVKHVAQHYFVCNPTISNIQDQDFVGFYDPMTIHECKAAFPYVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVVASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVEVCYSGSYVLYVKEVDFIPLASMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMSFAMQSSTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDANKHVFQFQPMQGNLAYVESSMQRFEADKMAMIGMTSPGDVMNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYIVWKTLVQYSDDYNIQQLAGVCSKGKPFMDAISMNNYEFIDRKLINIDLALGFLSDENRLTRQQLIGQAQQQFAALLAGLDPNVPELFAKARRPFEDTLRVLGVKDVDAYLPTIEEAAKVMQAKAQQGPSPEQKEIQSKVDLNNAKTQESQTVSALNMKKAEDIDTDNMFEALAAKRGKLSAVEID*
Ga0070747_10119574	F009320	N/A	MDRESKGVPIALPHDAGQAGRYTLTEQSIRETFEDNYGLNCIPGAILNPANDQGKVTNHKSYGINIMRLGMERKTLMINESCNAFLDEARNYAIDEGGKFSDPDDHIDSARIGILALVQGHGESMVSRANTFIYRRPEAVDGKVQRI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070747_1011957

Overview

Ecosystem & Geography

Associated Families

Sequences