NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098064_115942

Scaffold Ga0098064_115942


Overview

Basic Information
Taxon OID3300006988 Open in IMG/M
Scaffold IDGa0098064_115942 Open in IMG/M
Source Dataset NameMarine viral communities from Cariaco Basin, Caribbean Sea - 24B_WHOI_OMZ_CsCl
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1110
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameCaribbean Sea: Cariaco Basin
CoordinatesLat. (o)10.847Long. (o)-65.114Alt. (m)Depth (m)237
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017932Metagenome238Y
F068226Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0098064_1159421F017932N/AMKAKRTFFNSRTDRLFQNYTDINNHLWIILFDSGAELCFILRDLKKNDNIVNYIYKKLHQRFGNIIEIESSKISYVEYNLMKQKNIPSIIKIC*
Ga0098064_1159423F068226N/AMKKSRILRALKKHDAKDLNKNRVFSFKDEKGKEYFLAEQPQYMNIITQAINTILEKTFVILNDDKLKDKILKGLNNEQK*

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