NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098041_1056084

Scaffold Ga0098041_1056084


Overview

Basic Information
Taxon OID3300006928 Open in IMG/M
Scaffold IDGa0098041_1056084 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1274
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.401Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026877Metagenome / Metatranscriptome196Y
F058068Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0098041_10560841F026877GGAGMDTIILKDGSKQHTLPNWIGIQSKDEPITKTKWRRLDFEYHSINGYTQTIDNRDRITCTCKGFFF
Ga0098041_10560843F058068N/AMIKLKDLLLEVKVAHTEKSMFWVYRDYIPMSPKVMKQIMGDVPITTFHNLNPEAVKKQLPNVIGKKKSISTYTGDTSNRLSMGSGVQTSGGVVLEVEGKVLVAGTEDLGSVPDESGRRW

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