Scaffold Ga0098051_1003938

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098051_1003938

Scaffold Ga0098051_1003938

Overview

Basic Information
Taxon OID	3300006924 Open in IMG/M
Scaffold ID	Ga0098051_1003938 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4970
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)		Depth (m)	9
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008384	Metagenome	334	Y
F016811	Metagenome / Metatranscriptome	244	Y
F024348	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098051_10039381	F016811	N/A	KKRGNGYTNMYQGTKDRPFQFVTRAKSLDHINRNPEMIAKMMSFVGATGKSVYDFHIIEEFYRKEISNSFSHKEEDYSKEFGE*
Ga0098051_100393810	F008384	AGTAG	MPRYDKSLIEREAIISVQQGSLTNELGIFILQRCKEIAASAFVTDGNNELKQALIDAAVMRTCEKFLHYYTEGKSAANLVISIIYSTMTNKIVSLNHSDVYGQNIKGYLTYIEDGESVTKLMRYIKDDYLSEKL*
Ga0098051_10039389	F024348	N/A	MLFEEYYEDLTDAEANLILDIYRVIDLLVYNHEPVTLVRLGFELNINTQELSDYLPIIITILNKVEDQYAEVRQVAD*

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