NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098045_1002481

Scaffold Ga0098045_1002481


Overview

Basic Information
Taxon OID3300006922 Open in IMG/M
Scaffold IDGa0098045_1002481 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6207
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (18.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.205Long. (o)-77.515Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024923Metagenome204N
F077927Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0098045_100248115F077927N/AMTKYYNAETRNSLEMQFGGLVQAVKKLYVYPKRIDKRTKKYGKQRTELLKGNE*
Ga0098045_10024813F024923N/AMESCLKYNKKMNNQEDQLVAKDWWLKPSLLPTKAWSYEKGVNGGYIADFDSIGRDIRLIGTKQQLLEWFRETGVEIKDSWETELTDEHKKLYERNKKNIVVIRLI*

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