NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098060_1041490

Scaffold Ga0098060_1041490


Overview

Basic Information
Taxon OID3300006921 Open in IMG/M
Scaffold IDGa0098060_1041490 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1378
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.63Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020443Metagenome224Y
F041817Metagenome159Y
F043977Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0098060_10414901F020443GAGMKDLLIKHVKIGIGKTEISKTGKGAAVGGVGAIAYSVISDMGFMPGAFTAPDVIPYVVAGLSAGINFVRQF
Ga0098060_10414902F041817GAGMNRINWNNLPQDPEGWSFGDTKKAYTQLWNQLEECKRMRHAVDATLRARSVEVRGTKADLRRAKGQIVTLTKKEHQKSKEKSAAAYATTAATMLIISYQVVEVAGGFGRWAPVFEHEATIGVLQVMIGSILAFAMRPLQH*
Ga0098060_10414903F043977AGGAGGMAISANIVTMGGLAATGAYLRISDLTVKKIIQGDDSGKWQMTYGVDCYVSADERASDSPTTLVAPSVDRFKVVSDDEPTDPYAVAYADLKTQSTVSNASDLV*
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