NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070748_1001083

Scaffold Ga0070748_1001083


Overview

Basic Information
Taxon OID3300006920 Open in IMG/M
Scaffold IDGa0070748_1001083 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12850
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (5.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008695Metagenome / Metatranscriptome329Y
F023446Metagenome / Metatranscriptome210Y
F065127Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0070748_100108313F023446N/AMSKNVEFIDQLCELMGEGFFLRDQYDQDELFEMQDSIARLIADNANSGLGLAKYMVNKFPTTFLVEKI*
Ga0070748_100108317F008695N/AMKDKFKIIKVEHVWSDSEDRWIYIEYNEQYKIIGLNFMQGSAYDHFKAKWCYNDKGLTEFYRTMIDTFTIEEASSDTIEFINKVMWAYHAAISYKDQY*
Ga0070748_100108323F065127N/AMHSKINAIHQRASNKAFAKVEMCQIIIQQDEHNLKTGNYGADITLEQATLIAEGNKTELKVWQYIAELIEKSNKIQ*
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