Scaffold Ga0070748

Basic Information
Taxon OID	3300006920 Open in IMG/M
Scaffold ID	Ga0070748_1000662 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16222
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (81.25%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

16222

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (81.25%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001299	Metagenome / Metatranscriptome	727	Y
F012328	Metagenome / Metatranscriptome	281	Y
F030356	Metagenome	185	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0070748_100066211	F030356	GAGG	MLNIKNIPVQDINKNNKTNDRFVRMKNLMDVKMASYLRYLGTKNAVNRASDYHYLCLAVTDSTAPVNGIDYIHPSVKPAVDYATAVIAKGLMPNGEVNFEFVADGEDDSEAARQATEMVSKVINQMNDPHFILERWVMDSAMHKNGMMMIKPIREQITRYVESEGTLDQLRAFEQQAAESGLTTLSQGRRRVSVDMVKVMEEVKQLLDANQQQFAEDHVNNTLQAMKGLPEEAPEDNTMAIMEGFTSEQNDILQEAIRRNTIYKTKYKLTGYSLNIKFHPIAQHYWICDPTVPEMKDQPFCGYYDPMTIQEAMDLYPGIDLEEFSEYAEYNMNGAYQAGSVLNNLAIHARDSVPVMGIPVSSAASADPHSRQVSVVTVWNKYDIDGDGELELVELIYSGSYIISAREVEFIPVANMCPKPLPGNFYGMSIAESVIPMQEYNTSAARAEIQLGLLTATPRIGVKPDRVDFEMMQDGEAAIFILDSKFNPATDVYPMPPPSGNLQFLEVAMNRIQQDTMAMIGMTTPSDVFNPEVMAAGNSGVKLQLALSPNQIIQDNTVRNAAEGLKESLWLVWRTLIQYGDDYGVKKLAQSSHPDKKAEFLDYNAWDDMNFCERKQVNLELALGMKSEENSLNRLQIIQKCQTELYQTVQGMVGSGTLTPEMYKKVKKPFADTLYVLGVKDCDSYLPTDQEVMAMIKQGQEAQQSKGPSPDDKQKLSAANLNDVKAKQIEMEVAGQDAETQLDFMSMAAGDPKVYS*
Ga0070748_100066216	F012328	AGGA	MTKQNLNPPATAHVENPWDEAAPEVTTTKTKTKKEEAVKAAPPKSSSNADYDMDGLMTDFPTAKELERFVFDETGIVLNLKGRANKLKYQVAMDVLNGDEIDPKFIGSDNPYIDRTELVPVETLKEVPERDTHLPDRKQVQNLFVSNSIPHTDYESRMQDKKVSVIFRKYKTGEISFEILGPVDQRAHGMKLDKYGRERPEIIKWVDPRTGEQTIVRGDGSFTPQGRKLRAMMQTFRVNNSNQWDIWIDREFISLGDNVISNVWDLDK*
Ga0070748_10006627	F001299	N/A	MSNDQPEYLDNNDPEKNLDYYRQDHGGMITSHNGVADKLLQNNDLYNSMKGDWSRTSTNKSGNIIVTTGREDGKFYIRREQKNAEAVARRCAEYRKAAEMGIPDPLAPLMPDGTLGWKWMDLPSVVSVRISDQYFGGIPWSAIKNDRTLKAQFYRVVQTEYPQYVCYPRGKLPIPIDVPYPTKQGETKFFKGR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070748_1000662

Overview

Ecosystem & Geography

Associated Families

Sequences