NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0066376_10112778

Scaffold Ga0066376_10112778


Overview

Basic Information
Taxon OID3300006900 Open in IMG/M
Scaffold IDGa0066376_10112778 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1682
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001493Metagenome683Y
F023211Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0066376_101127783F001493AGGMLTFKSFLKERTPAWTESLSTMLFDLPREGLKDLKIPLSSPIFKRIWPESVRSRVFHLTDYDGLEKLKKMQGKKKSISAFYNIREIIIQSGIKTEGGYVVELEGDVLAASPDDVSSQPDKSGRRWITFSSLMNPSTASDPGLGGKAKLKRIEKDLESLLVDILVKNDMGPYKKGLTTKELNRGWSYLGKSTGGKEKSIIIKDYIDGMEKIMKKYSKPLKSVFTDYAFDKELVPDPDSGDKALWDEVVVNNIKIQKIHVSPEFSPDFAELVKGEGGERMYTFANKDKDIEGFPFELYYEVGDMVDYIARTRN*
Ga0066376_101127784F023211AGGAMKRFKEYLKEFAQRSTSEYVFDTHTDNSSSLKIPISGPMFKRIWPDTIRATVFHTTDLAGLERLGKLEGGKKS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.