NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073928_10028263

Scaffold Ga0073928_10028263


Overview

Basic Information
Taxon OID3300006893 Open in IMG/M
Scaffold IDGa0073928_10028263 Open in IMG/M
Source Dataset NameIron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5474
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000192Metagenome / Metatranscriptome1666Y
F003202Metagenome / Metatranscriptome501Y
F073879Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0073928_1002826310F073879GGAMRSPRLSTPRIWKYIAAGCSGKSTEEAGRRIAAIPEDKRYLTRVLDSLDSAFANFDTETAKLDLPHMQSRRPEAIKRYLEFRLRQVKMLIEAVEDYVEERYPARGGHS*
Ga0073928_100282632F000192AGGAGMAANQVVLYFDTQQDALLFALAASSVMSAEGPVHSNKAAVRVAEEICKASRIMTEGVLNIR*
Ga0073928_100282638F003202GAGGMTMRNLTTALLITFVLGAGAGFRRYENVRNAAVVRRLTDQLEQAKSEVGDATARLSEANQKLGFLEAAKARVQVTAYALTDDFGPDPLFSNNARARSAYAVPKHDLPAGQVLNVALSPMAERQLHANLNDTIVLMSKNRARRHLARFVDRTAQTETRPVVDILFADAHEARIWGRRSFYAANISQPDSPFQQR*
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Institute for Fundamental Biomedical Research
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