Scaffold Ga0073928

Basic Information
Taxon OID	3300006893 Open in IMG/M
Scaffold ID	Ga0073928_10000013 Open in IMG/M
Source Dataset Name	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	474064
Total Scaffold Genes	438 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	162 (36.99%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

474064

Total Scaffold Genes

438 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

162 (36.99%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000303	Metagenome / Metatranscriptome	1337	Y
F002081	Metagenome / Metatranscriptome	596	Y
F004014	Metagenome / Metatranscriptome	457	Y
F037927	Metagenome	167	Y
F105653	Metagenome	100	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_1000001313	F002081	N/A	MKISNDDQRAIGLIMFCVGILAFLIGLAGHLKENYHYRGEISCTGFTIAIILGGIGVALFLVSLRKKRD*
Ga0073928_10000013300	F000303	N/A	VTSLAIEELPAVVKIDVEDFLENHPRSPAARLRPRMGMVGDTWLAFIGSKLQPGASGLGPTPCDALEDFNRHFMEPLISRNGSEPD*
Ga0073928_10000013399	F004014	AGG	MSKTRLFILPVVLLFCSLSFAQESSHSGSVKQGAPKVIETDDMKLAMKAGKLETAGKYDEALKVYAQAIDLKGRFTPFVYHNRGMLYLHRAKASQDRESRIADLRHAIDDFQTSIRLGAASKDELNRGLEKIATRTNLDEANKLLDKETHQ*
Ga0073928_10000013405	F105653	GGA	MSAVRLHSDLAIHRNRGRGEVPRCMNNSWNISSCSLNRLNQSLFVFTVCAVAAFANAANPDYQIYDESPDGRFGFRDSLAGSAKIEESDRDLVSAIEVVEISSKRVVLPSPKEALTPIRLRRQPQAWSSDSKHSALSFQTGPRTWTAALYEWDGNEFAQVSWTRDAIRKRIEEEQAAQLKALGLPDDTPRKLVYEGFTALEWVDATAVKVIAERIDSVVVSKDQPPAELDARFTFVIKIRDAQNAEIADATKILGTHGYDAEGDWAEARLVDEQPESSYLVKDVEEGQQPFSLYALERFRVVGEKEGDYVVKDGCYLDGCYHKGRIPRRLVHKFPSAFSGDEIEIDCSAESPGVYYWVLVKDAESGYLPALRAVFAFTGFDGMAGEAQAFSIIDIKKHVSARQISEAQKSFSTADRGTVRRSKSSAIRRGKRTDFSQVLAKADACGRLVDENSDGSAGMRVARIPTGKKPFQLYGGEYFAIIGEKDGDYIIQDAAGNQGYVAKDFVETVPKPTTESAMLLPLMGLHYMRVVKGTQSERGYSGDTRRLMLSLDLTGQSGAEHAKNLEKMLARQDAPSLLKEFSPARVKAIGAMLLQGRSENEKTELIRKYPQIFHGDALPKGPAKINHRFPARPRSSP*
Ga0073928_1000001356	F037927	GAG	MERSEHAALKIEVTDPQPLCVRAASPAANAWWLFCVLIFAVKFLLLWLDSTPKLFLGDSGAYIWTALTGWIPSDRSYFYGYLVRWLAVWPHSFGPLLLSQMLVSAVTAIVFALICSRFFEMSNRLSFFFGLMCALDPCQLVWERYVMTETFSLLVYVLVLYWSLAYLRDRRLWQLAIVQALSVLLIGFRMSFLPVVQACTILMPLIAFARCAFPALRNRSEARAPEWGVLTTGLTHMIVSIAMMFVMHGAYKYANGWLSNREPAYLYDAGAHLAAVWAPALEPSDASDLRFGDLIANGPQIKIKDLRSRNAQQYGKGLLIDRWREIEKDPRKNDRVARETAINALRRRPWEIVWLAVETYMGYWNPGSIQGYARTDLGYAKMNDDAVKMFAEKFGFRAVKDPRTQPYSLLQHYFLRSWPYYFIVIVSPLVCAFAIWLSRDRSFVLLLFVHASILMAVVTVLSPQPCIRYLQPVSVLTLLSIAICATGSLGEQARRRRNPLPDSAALKQRI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073928_10000013

Overview

Ecosystem & Geography

Associated Families

Sequences