NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073928_10000004

Scaffold Ga0073928_10000004


Overview

Basic Information
Taxon OID3300006893 Open in IMG/M
Scaffold IDGa0073928_10000004 Open in IMG/M
Source Dataset NameIron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)725374
Total Scaffold Genes659 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)469 (71.17%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Associated Families12

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000136Metagenome / Metatranscriptome1961Y
F000214Metagenome / Metatranscriptome1570Y
F000901Metagenome / Metatranscriptome844Y
F000954Metagenome / Metatranscriptome822Y
F002075Metagenome / Metatranscriptome596Y
F002165Metagenome / Metatranscriptome588Y
F004157Metagenome / Metatranscriptome450Y
F005753Metagenome / Metatranscriptome391Y
F006426Metagenome / Metatranscriptome373Y
F008630Metagenome / Metatranscriptome330Y
F008829Metagenome / Metatranscriptome327Y
F042768Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0073928_10000004121F005753GGAGGVYRNTSFGFSVKVPAGWVLRTEEMNVADASTATESRAALDRTAPSASLRASLGGCPHLGACGRVLLAAFSRPPEAKAEDVNGSILIAVESVAAYPELREAAQYFQPVMEVAKAQGFEMDDEPYEFVLGPKKLVRGDFQKDVGTRVMRQSTLVVLARGYVVSFTFIGGAEDEVEELVQGLSFGAGSKATR*
Ga0073928_10000004134F000136GAGGMKASKLKILYGESNAEAQAVTAGAFEQAGHTVEKALGRKAVEAAFSKGTFDLVVLGPTLSRNDRHHLPYAVKKVQAKVSVLVMHADGSRHPYVDACTDTGASVENVLARIEAMKIAGTAPMAAGAAAGR*
Ga0073928_10000004188F000901GGAGMATTTAAAYGIYSQDVVLTDIVRNLNQAGFENEDICIMLSPSHPIASIVREASLFATDQEDTDASAGMIGWLSAFGAVLIPSVGFFIRSRVFLHALMVAREAPALCGNARTLVGLGFSEHEATRFEDQLSRLGVLIYVSCDENAKTLWAREVLRHSGAQETSTLEETLMSVTAAA*
Ga0073928_10000004233F000954N/AMSSPVSPIKKGLIIFGAVVLAPVLLVGLAVFAAGDWRTIGATATGDQVLVSSVTPQKNGLRTAWVRVEYKEPTHLPQGGPFVELRARVRFNCASGTAIANSEWFYSRDRGGKLVVSKKTRHDLQFGAPAEGDFGELAREFVCKQK*
Ga0073928_1000000424F002075GAGGMTSQSPQTLLHGWRELYTAALFETDKNRIPDRIAEAEKAIIARARELFSAGADTIEEDQALDDALYALRALQNCLEFRAAA*
Ga0073928_1000000425F008630GGAGMPHKMTSSHIETQRPPSPDDLKRVFESAVCEIHQADVTSGKKLQYRAPIVSRARMLGLSQAGAEKRALSDAARALAQLWKV*
Ga0073928_10000004274F042768AGGAGGMKDVMELLRAKEQELLKVKRQVEALRIAAPLLGGDEDKASSSSGPIAAKGANGLG*
Ga0073928_10000004348F008829GAGMASSAFAQSQQIQHRRRPAVIADAGSSAAPQTQPNYEFFSILNGLPMGLELHHDTQVGTGRAIDVYMFPIELQVMNSDGNLEPVGLIFDNFYTAKAMDPITAPNPNNARDCKIWNTMVLFALNNRNPKSRTWPYIEFTVAEGARVIQTNEDGPVWWSDDVECWGSRDRFSPF*
Ga0073928_10000004521F006426GAGGVVVNSSDPGSNPPPRSATIIAAGLLLAALSLVVLYTERGAFLSPVALVVIAAIGVAALLLQLRLRTDISPSARVSTRATLWLNALGVLFSVGAVLADVFHPRASVILIASLVAVGCFSISGIIVLKALRKPRI*
Ga0073928_10000004561F004157AGGMALSAAAMGQAAAGQKSAPATIKTLPDKTSAESSASDNGQPENNQTGLVIEPAEMPVTYPHGPYNSGFHARGNYVPVLHWSVEKGKLPPGMILEDNGALRGEAQRAGEFQFVIVVRDGGNPQQAVRKSFVIKVVEALTVAWKVPAHVNANRIEGSVEVSNATVDDVDLTFDVKAVAQDGRATEIGYQHFPLKRGTIGMALPFGENLPYGSYVVYVNVNGEIAKRNAIYKQQMKTPAALLVAVGP*
Ga0073928_10000004566F002165GGALCILNFSERSGGNESDESMVEKSDTPAEEILARQQLDLDRLKEALGLLGVSPCAWCKKYSRRSDPGALFDAGELVCYGCIGEWWPRRSEQLSTKEREDLEGKLVFWLRDYHDAETFKDPAKLPESSLQELHIVANCLECRGTGKLLGDERCRYCEGRGTVWVIVSRKQG*
Ga0073928_10000004568F000214AGGMKNVYEVLRQKEMELTRLEREVEALRLVAPLLSEEKEMNSELGKSALPTAVNGPQQPIRIPSPPVVPQAQPVRAAGWDDSAKRWP*
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