NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0075464_10365263

Scaffold Ga0075464_10365263


Overview

Basic Information
Taxon OID3300006805 Open in IMG/M
Scaffold IDGa0075464_10365263 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)874
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002162Metagenome / Metatranscriptome588Y
F004599Metagenome / Metatranscriptome431N
F007469Metagenome / Metatranscriptome350Y

Sequences

Protein IDFamilyRBSSequence
Ga0075464_103652631F002162N/AMPNYDYMCDGEGLVIVLDLPMDHKIPHCQVCGAKLRRVYTAVPAI
Ga0075464_103652632F007469AGGAGGMGEMIMIDGSGLTATFTDSGVTVEPSTVVCDNCNDDRLLHEGDLLRCYSCHAINRIPYNA
Ga0075464_103652633F004599N/ASVISHDAVNGYILVQATLWRDSKDQQPCVSNIAFGARESYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVDDAPIKNIYGKSGNSQVIEMALRKSFADDAKPASEPTTWSVGDIAEALSSKPKQQECIHGLMILKEGTAKTGKPYYGYVCSAPKGEQCDAKWAVTAANGSWFFREED*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.