NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075520_1001364

Scaffold Ga0075520_1001364


Overview

Basic Information
Taxon OID3300006795 Open in IMG/M
Scaffold IDGa0075520_1001364 Open in IMG/M
Source Dataset NameArctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11693
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameUSA: Barrow Environmental Observatory site, Alaska
CoordinatesLat. (o)71.299Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004136Metagenome / Metatranscriptome451Y
F016391Metagenome / Metatranscriptome247Y
F032724Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0075520_10013642F016391N/AMSDDILRYTDLAAAIQLAKANEMTTREIVRELTRGMSYADALKHARMAAPLLDIGVMEFMRLRKNE*
Ga0075520_10013643F032724N/AVKVAAVKSQKSEAGLLDQATSNLLRAVKQKMAKKQGRVDYGKLRKDGYSDRFLAKLEEA*
Ga0075520_10013647F004136N/AMWQAQGQLGELIAQACRGETIVLTDGDRRVTLEPGVALDLDEDSPELEAELLKAANGPHSPFRERELREIADRALREHHAKRQQ*
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