| Basic Information | |
|---|---|
| Taxon OID | 3300006793 Open in IMG/M |
| Scaffold ID | Ga0098055_1032109 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2174 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -14.51 | Long. (o) | -76.2 | Alt. (m) | Depth (m) | 15 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015079 | Metagenome | 257 | Y |
| F024541 | Metagenome / Metatranscriptome | 205 | N |
| F036970 | Metagenome / Metatranscriptome | 169 | Y |
| F063642 | Metagenome | 129 | N |
| F091789 | Metagenome / Metatranscriptome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0098055_10321091 | F015079 | N/A | MVQAQIESIQGKGDWKGKHGTMYTFEVGFNDGTIGEANSKSPEPPYKVGDEAYYEIKSDDQYGKKLKVSKNPPPPGGFKQFQPAKQDPDKDKKMIRGMCFKVAGMAWANQYKHKSFELPHHVMVQGVMALAKEYEQAYNEWMEE* |
| Ga0098055_10321092 | F036970 | N/A | MTKYKRWFTSVNRAIVAEMAMQKKTHKDLAEVLQIHPVTINRKLKDPGTFFLSELGQICETLNIDLKNPPNYGTGAN* |
| Ga0098055_10321093 | F063642 | N/A | MEHTCTQLFDEVIQLATPDCVKRRDMSLVRKLKDLQNYTQRLEKIAEDALDTLKDKNA* |
| Ga0098055_10321095 | F091789 | N/A | MISVHPYQCRTWSQAKHEWGWLMRSRGLQQINRNAPTGYGEAPDLLNGKVEGPGFVIYGSGYDPRETNHTISAMSSVYGSRYCGTLNPF* |
| Ga0098055_10321096 | F024541 | N/A | MEFFDMIISQYGSVHRCAKKLGTNREQLLRQIRTGNAHVLDAIADNCRLSRQEVRWEFRYHTEHREAKV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |