NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098055_1000732

Scaffold Ga0098055_1000732


Overview

Basic Information
Taxon OID3300006793 Open in IMG/M
Scaffold IDGa0098055_1000732 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19046
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (30.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004606Metagenome / Metatranscriptome431Y
F015210Metagenome / Metatranscriptome256Y
F042621Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0098055_100073211F004606GAGMKAHRIFTKGQTVYCLLSSFSRPNVLLPVKGLIVDTQWDPVNPLYQIRIIKMYDNMKYLKTHFFDMNFKYEFNNRARKMPIKKEDFKNVKSLEDRFDESDRERLYVIVESVMCKKTKNDLQGLFEKVQFYIISKNLKEIRDISSRPFFKGSLSTDSSQEFNVRFKKGWVDKFQKGDIDIDKYLNSLS*
Ga0098055_100073215F042621N/AMGNTEEVNLQWIKGDKFGSVETVESTKDEWTIFKSGGRIATNLLSEFLEPLDGEPLDFDPPPPTLTKAAEVYKEKVPQQKAITSPIRTLFDKQKKNDKVKLNLSFPIEVPKKAIYEIISSSFDGEEVNNELESFIKNQISEDLILDSLFDSIKELIKTRYKID*
Ga0098055_100073219F015210GGAMYPFHISPVVKQQKLTNIYCMELFEKYRKWGKDITVFDVDDTLIVTKSKIRVFNPKTGYEIDLTPQEFNTFKTKPHDEFDFNDFRDLEILKAGKIIDWVFRILKRTIAKGTAVGIITARDDSKLIYDFLMHNGVDVNPDFIFAINDPSLGFTGSTAQKKKDAFMKFVQMGFRNFQFFDDDKENIRIANSLNKDLPEVKMKATLIKQKWIPNFSDFK*
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Institute for Fundamental Biomedical Research
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