| Basic Information | |
|---|---|
| Taxon OID | 3300006736 Open in IMG/M |
| Scaffold ID | Ga0098033_1038646 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1426 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -13.003 | Long. (o) | -80.809 | Alt. (m) | Depth (m) | 275 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F040060 | Metagenome | 162 | Y |
| F047632 | Metagenome | 149 | Y |
| F081218 | Metagenome / Metatranscriptome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0098033_10386462 | F081218 | GGAG | MPRFQKGDWVKWVGGAYQNLKGIVIDTRTEDECWGRSLVVKVIWDDNSLGSLKQRPRGSWQRGSCLRVLSSVEQNDENE* |
| Ga0098033_10386464 | F047632 | GGAGG | MKIGDFIRWRDHANYPGLCGIVTQERSQTVGAHKRGESREIFVHWTTFPRDPGYAPGWEKVENVELLSSGETE* |
| Ga0098033_10386465 | F040060 | GGAG | MIRVGDLVRGHWFPRKIGVVTKIDDIAEMAYVQYSDRTNSWESLSHLKKAVK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |