NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098038_1011731

Scaffold Ga0098038_1011731


Overview

Basic Information
Taxon OID3300006735 Open in IMG/M
Scaffold IDGa0098038_1011731 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3421
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019754Metagenome228Y
F020110Metagenome226N
F022313Metagenome215Y
F023484Metagenome210N
F098218Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0098038_101173111F019754N/AMNHNSDDFMIPSELDPTLPWPPSDDDIDAMELDAYDRQKLQALIDHELFMDEMAGVPTAAERNPNLK*
Ga0098038_10117313F098218GAGGMTSFSSWSKRPEEMRAAAKTRAIAALHKKHSKGLTTLERAYLHALKTGRLDLDD*
Ga0098038_10117315F022313N/AMTYHYKPEQEYESTKLERILKELQSIIKRDNKRHMMDQHLTHSMRDLLEYEIIPLLEAEVDYDPTPQTPYDFFHQ*
Ga0098038_10117316F023484N/AMEWLRTNNLITNHFRLMNVNTQSGGFLIASLGRYTSKTEKIIFFKTRAGSLVSSYYVSTFNAIKEGDGLMLSNSCDPDQVIDADQVAKCKTFIRNHS*
Ga0098038_10117317F020110N/AMSTQQEVQARLSYTRAMLERGIRTASVATMVSAKFCVSRSTAYNDITASQAEIDLSEDGPSLEESSEPINTNSVLAMLQHRLEVSVATGDDKAVCSLIKAMNQAKQWNGYAPTTSSPTTFV*
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