Scaffold Ga0098038_1010661

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0098038_1010661

Scaffold Ga0098038_1010661

Overview

Basic Information
Taxon OID	3300006735 Open in IMG/M
Scaffold ID	Ga0098038_1010661 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3602
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)		Depth (m)	30
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000774	Metagenome / Metatranscriptome	896	Y
F001294	Metagenome / Metatranscriptome	729	Y
F045426	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10106613	F000774	AGGTGG	MAQSGRKTIIIDAPIMITSNKIAVWMDENWMHNFFDFIKKNKFQFSGLQHKNKKLKLTFATAKDCTMFALKYAGRKK*
Ga0098038_10106616	F001294	GGAGG	LSKIDLEISDNLEFNEGDCAVIIKEDGSIGRVIMPKINRKMLDSAGYKNLLDVLEILQPGSRDKMIKHAEKDKGSVH*
Ga0098038_10106618	F045426	N/A	VYNKTNKKFTKKIKPTIVDLPNDGPLSIIPLSAVLSEYHKKKSKHTVKVLNKDGQLDARWIKNELPMWQSIWSEKGIKIRWDRRQRSFFLTVVK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.