NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098038_1004680

Scaffold Ga0098038_1004680


Overview

Basic Information
Taxon OID3300006735 Open in IMG/M
Scaffold IDGa0098038_1004680 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5619
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004629Metagenome430Y
F005038Metagenome / Metatranscriptome414Y
F005431Metagenome / Metatranscriptome401Y
F015660Metagenome253N
F035491Metagenome172N

Sequences

Protein IDFamilyRBSSequence
Ga0098038_100468010F004629N/APSPLNMKNRRTEMFSLIDRLYGIGKDKDSYKGEDKPKMKIRLNGEQLQVYEFCILLLVKANEKDRDIISLRNFPYKRSFRQLKHFFLPNSYEKVRQDYYNALYELLKLYHLKGKAYFLK*
Ga0098038_10046803F005431AGGAMMEFDDKEKGYSAVIYIMESSNSVVVHFGGFNDIRECRYFSHHIMEDFGIEQLLNVPQGVTVH*
Ga0098038_10046804F015660N/AMANKTKYSKELIDSIMKDLAEGISIKASLKNHSISWECFRKWLLDEKKYPSLRAKYTQAKQDGIEYSLSDAQSLINQAVQDSKFKEKTDLGSTHLIKEFISLAKWRAEKLSPKVYGKNDNLKVSGDKDSPLIVKWNG*
Ga0098038_10046806F035491AGGAGGMNLRTKPTWELRAIVKALSIIPFLNTDEDNERLKQAQIVLYERRLKNSQPIKMEVK*
Ga0098038_10046808F005038GAGMKAKDINIYNLFAATYKKRKMFSFIGFSELSLMPKVNKPIRQISNVYQFPIKSYYNQKRRVK*
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Biomedical Sciences Research Center "Alexander Fleming"
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