NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098073_1000870

Scaffold Ga0098073_1000870


Overview

Basic Information
Taxon OID3300006734 Open in IMG/M
Scaffold IDGa0098073_1000870 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9338
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (60.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010650Metagenome / Metatranscriptome301Y
F012872Metagenome / Metatranscriptome276Y
F013704Metagenome / Metatranscriptome269Y
F014505Metagenome / Metatranscriptome262Y
F025860Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0098073_100087011F025860GAGMETNNIYQIIDDLSGFAEQVGSEWMKERLAMLEAHLAVLEINQSVKS*
Ga0098073_100087014F012872N/AMDLHFEGNRLYYLEKEAELFKVLNYLSNELGKNEPMTQDQLWEVFHICSDTAAIYRHITDYFSTLDKLILDARITNGKLKQELYDMKKENERLQKIVNQHLDEF*
Ga0098073_100087015F013704N/AMSFKRKMANGQRFEINGMEFICMETTIALQTRIDGEEPDIDVDGSYYIVRNTSTGGLHKIPFKRIIEKEKEIRWKI*
Ga0098073_100087018F014505AGGAMDRIEKFYRKNFKRLTGFIKEYTDGSYEVASDIVQMVFLRLLEMESEGRTNFYEEDSLNFFYVYRACINTALKYQRAKKKINKVSLEDFDVVDQEMEYDQINAMEKMILKMEQEMGDLHWYDEKMMRIYMEGTSMNKIHRETDIGLTSIKNTIKNGKARIYEELREDWEDFQNGDYDQI*
Ga0098073_100087027F010650GAGMKEMKQFLRIANARLRKVYPNKQQRSAWAAKMYSRWIERINAK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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