| Basic Information | |
|---|---|
| Taxon OID | 3300006654 Open in IMG/M |
| Scaffold ID | Ga0101728_103067 Open in IMG/M |
| Source Dataset Name | Combined Assembly of Gp0125100, Gp0113270, Gp0125099 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | The Marine Biological Laboratory |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6309 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (81.82%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Abyssal Plane → Marine → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | North Pond, Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | 22.78 | Long. (o) | -46.09 | Alt. (m) | Depth (m) | 4350 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000245 | Metagenome / Metatranscriptome | 1468 | Y |
| F001493 | Metagenome | 683 | Y |
| F002715 | Metagenome / Metatranscriptome | 535 | Y |
| F002745 | Metagenome | 533 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0101728_10306710 | F000245 | AGGA | MKTFKEYSLDRKLDKAVSDEIKKRKLAKFPVNATDDIKMRMKPNKPAFTFPSPNSDMMIQVFLKKMLPSKGQPKGMMAFNYQFEDK* |
| Ga0101728_1030672 | F001493 | GGA | MINFNEVYYKSIIKEAVAWTQSLSTMLFDLPRAGFKDLKIPLSSPIFKRVWPXTIRSKVFHVTDFDGVXKLKRLQGGKXSXSAFYNMDDYIIQXGIKTXGGYVVELXGDVLAAAPDDISSQPDKTGRRWLTLSTIMNTSTASDPGLGGSNKLKKMEDDLGRLLVKILKKNGEDVDEGSRDNIIGLQWSGLGKKHGGKXKSIIIKDXXDGMEKIMKKYSKPLGALLTDYTKKRTLDPDSDSGEKAMWDELVVNNFKIQKIHVGPEFADDFEDDDDIDGFPFELYDTPEDMVDYITRTVQKIKL* |
| Ga0101728_1030675 | F002715 | AGGA | MPEHELQSVKLEVGLLKSEVEVRGKQIETLLQKLDLTADKLQELTVQIIKLNTRQEDYLRHSSTMSEEFKILHTRIGDLHDKQLAAHKEIEQRLDRLDQYKSKLMGMIIVVGGVVGTIVATAISVFLKD* |
| Ga0101728_1030677 | F000245 | AGG | MKTFTRFKESKLDDRLDKIVSDEIKKRKLAKFPVNATDDIKMRMKPNKPVFKFKSPNSDMMIHVFLRPMKGKKGVMAFNYQLEDK* |
| Ga0101728_1030678 | F002745 | GAG | MKSFKGYLTEFAIQSTSDYVFNAGSDSSALKIPISGPMFKRIWPDTIRTTVFHATDLKGLANLKKLEGGKKSISAFFSMMSRYMETGVATEGGGIVAEMDADVLVSARDDIMSEVDKQGRRWVMMSWFEYQTRERSKFGKIEKDLNTLIANLVKKHLPKRMKVIVQTKHFGKDSGAAFDIWGNMKKHLKGDGKKLRLVIKDYFDGVEKIIKKNKKVMGDIFYGYAKSKRMTDNXWDEQIVNNIKXKKVHLITFTETPNKKEEEIIEYVNSTKWPLKTWTASIELEIYTRAVIAKEIGRKIR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |