NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075471_10008027

Scaffold Ga0075471_10008027


Overview

Basic Information
Taxon OID3300006641 Open in IMG/M
Scaffold IDGa0075471_10008027 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6605
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006543Metagenome / Metatranscriptome370Y
F012108Metagenome / Metatranscriptome283Y
F043359Metagenome / Metatranscriptome156Y
F074795Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0075471_1000802711F074795GGAGMTREQAIIKILKVLKSPMMVMNKHNRDEALTLAEEHGINAKDLIEVWSNMAMRI*
Ga0075471_1000802714F043359GAGGMEWNNSHKNPPKQGQKVYYFGPNIGLWIGHYSYEDERSFTPYYYDENNVKVYEEKVVELCPHVFTNVNAGVCDACDAPFWLPYDEERAKSWCPIIPEKYTKDLYD*
Ga0075471_1000802717F012108AGAAGGMINLQLTVAEAIDIANTAGNDLHDRIVKAIELALGVNQSRIVTITGGLTLDNRIACIKAIRLATGWGLKESKEWTDYLVGGWKYDKFVPAPIGAKQSITLSTPQAAENLLRELTSLGCKGHLA*
Ga0075471_1000802718F006543GGAGMKKFTFAVDVVADDLDRDSVVDSIRECLSSNLPSDVHANVKAGEIKAFSEQGYKVWRARVTGVTAEQAGDAHNAKVEAEAVA*
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Institute for Fundamental Biomedical Research
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