NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079301_1008078

Scaffold Ga0079301_1008078


Overview

Basic Information
Taxon OID3300006639 Open in IMG/M
Scaffold IDGa0079301_1008078 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4055
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015208Metagenome / Metatranscriptome256Y
F040596Metagenome / Metatranscriptome161Y
F043387Metagenome / Metatranscriptome156Y
F063685Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0079301_100807811F015208GAGMYKITVANDENPIHWSKEYSDELNAHEEFAKFIDWGFADEYSTINLFTPSGKCYTKIFHRNGKVVKR*
Ga0079301_100807817F040596AGGMLATAVGILDATKDSIFDEEIMGLAGELHERRNELSDEVFARYLFMYSTALSSKVADLVTKVCLTKEEMSA
Ga0079301_10080784F043387GAGGMMTKWDTIQADVADAYTYLDEAEVLDKHNSETLFDEDTLSMDEVIEKELTLDWEDYE*
Ga0079301_10080785F063685GGAGGMSEGFFTIEVDTYGFMLDSAWCYVALSWQLLITTTLLITAYKIYKIRKNK*
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