NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079301_1004716

Scaffold Ga0079301_1004716


Overview

Basic Information
Taxon OID3300006639 Open in IMG/M
Scaffold IDGa0079301_1004716 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5621
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002489Metagenome / Metatranscriptome554Y
F005531Metagenome / Metatranscriptome397Y
F021111Metagenome / Metatranscriptome220Y
F024319Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0079301_100471616F024319AGGMTNRIWESRNDYQNDAQRLGYVTCSAGCGRVTAWSLCVMCGGNYAEHNLLGKAVI*
Ga0079301_100471618F005531AGAAGMTITYTLWQGSQLLAVNQKASKPEEILAVIAELNKLGKGFTYNIR
Ga0079301_10047163F021111GGAMETSKEPSIQINTDGGQIKETDQMGREKFWEDLGRPSDRG*
Ga0079301_10047164F002489AGGAVIEDEKPQNLEDNLPMVNYIMLHRIYDLLTLIANKLVGPEDVSKMVEYHDQGYLLGPAPSFSPGEQEDDAQSS*
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