Scaffold Ga0079301

Basic Information
Taxon OID	3300006639 Open in IMG/M
Scaffold ID	Ga0079301_1002567 Open in IMG/M
Source Dataset Name	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006639 Open in IMG/M

Scaffold ID

Ga0079301_1002567 Open in IMG/M

Source Dataset Name

Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7939
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (38.89%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7939

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (38.89%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Ohio
Coordinates	Lat. (^o)	40.178	Long. (^o)	-81.073	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio

Coordinates

Lat. (^o)

40.178

Long. (^o)

-81.073

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F001345	Metagenome / Metatranscriptome	718	N
F006503	Metagenome / Metatranscriptome	371	N
F007111	Metagenome / Metatranscriptome	357	N
F025272	Metagenome / Metatranscriptome	202	N
F044457	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_10025671	F007111	GGGGG	METTILANGQPVGKFGSGSMKGIDQTALEGIGSIVGPKGGGKSPTYDVLVKWVARVIELAKKNLEAANANAGGTLSASIDFGEIELTAKEIVVTVVANPYWKYVDQGVHGRSSSYISARDSKFRYGNKIPPPQAIADWIANKEIAVTPTYSRKLKRMRTKQEQGLVLGRTMAFAIRERGVEGTKFMSNALSPEMID
Ga0079301_100256714	F006503	GGA	MTNEQFIVAQKHRKYWDQYVASLTMRLPPDAVGELQAILTAHGRPPTNWWCADCVKSALQYIYLQADLFAEANQNTINHSLNAPANPEQ*
Ga0079301_100256715	F025272	GAG	MDILVFPILISALATLAVVEFRVLPGWFYALPFVKRKPFSCMTCFGFWLGVALTLPTCQWYLAPILGLASSATAIIIREWTFK*
Ga0079301_100256716	F001345	N/A	VNAESIVLDLYRSGEIRKACLTITGGNPLWKDLEQEVVLILLEKDPDKITKMQDQGYLRFYIVRLIMNLYRGNNNQFAKKYRHHDERVEVDPETQEEGKDYDSLLDDLWAIAQQEMDSWAKDGAFPYDKELLNLLMQTGNMKAMSRETGIPYRSIIYSIEQAKAKIKTAIESNGYTGFSNPD*
Ga0079301_10025675	F000557	N/A	MKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAIVEGVDISLVREMSAKSVLKRYKAIISEWNALPALGYKRKFKAGGKWWIPTVFTDELTAGQLIELMDANTTDEKQLLQNLHRIMATLCREGGLFGFFPKKYNGAAHAERAELMKKHAKVGDVWGVVSFFLLSSESYLKVLSDYSKHLMTKAGELT*
Ga0079301_10025677	F044457	N/A	MKAKTYIFCHDTDIVKQCEAEDRFKDFFPYTWVMLGFKDFEGMAGLDHIVARDEADNIESHRNLVAWTGWYALAKNGYIKPGDVVNLFEYDLTRNGDFDQRAYCAYFRVPVDVVPYWSCGDNYEPHIKQLTGRGAKEFYQPVVPVTSNYTLTWDDSYLDLTIACIEQKLVAIPHVGHILERAYSQRFADIPYNVAAFKHAFANSHGF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079301_1002567

Overview

Ecosystem & Geography

Associated Families

Sequences